Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs71559054 chr6:27896799 A/C 2.21E-8 287 25.62 27.78 9.77 KM Plot
KIRP rs71559067 chr6:27994416 A/T 2.01E-8 288 25.62 26.4 9.77 KM Plot
KIRP rs71559070 chr6:28038929 G/A 2.05E-8 288 25.6 27.8 9.77 KM Plot
KIRP rs71559072 chr6:28089481 C/T 1.42E-8 288 25.58 29.2 9.77 KM Plot
KIRP rs71571285 chr1:181716290 G/GATTCCT 0.000165 283 20.9 29.87 23.4 KM Plot
KIRP rs7160677 chr14:70560649 C/A 2.81E-6 287 10.83 28.83 25.37 KM Plot
KIRP rs71642219 chr1:28259338 C/T 7.44E-5 281 25.82 26.47 20.4 KM Plot
KIRP rs71700459 chr13:42440528 CGT/C 1.38E-14 287 26 22.57 8.03 KM Plot
KIRP rs71708200 chr16:90112506 TCAA/T 1.61E-8 283 25.5 35.67 10.7 KM Plot
KIRP rs7175599 chr15:26155561 A/G 5.77E-6 281 19.9 20.8 26.2 KM Plot
KIRP rs7175802 chr15:26155662 A/C 9.66E-5 282 22.28 20.8 26.2 KM Plot
KIRP rs71807160 chr6:169265061 GAA/G 2.93E-5 277 25.82 26.38 6.7 KM Plot
KIRP rs71816280 chr6:169265050 AGG/A 2.93E-5 277 25.82 26.38 6.7 KM Plot
KIRP rs7185199 chr16:8714742 T/C 2.16E-5 286 5.72 32.93 25.62 KM Plot
KIRP rs7185211 chr16:8714774 C/T 5.14E-5 289 25.57 32.93 5.72 KM Plot